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Ireneaus of Lyon:

• Against All Heresies, Book 1.
• Against All Heresies, Book 2.
• Against All Heresies, Book 3.
• Against All Heresies, Book 4.
• Against All Heresies, Book 5.

Tertullian:

• Against Marcion, Book 1
• Against Marcion, Book 2
• Against Marcion, Book 3
• Against Marcion, Book 4
• Against Marcion, Book 5 

• Against Hermogenes
• Against Praxeas
• Against the Valentinians
• Appendix: Against All Heresy
• Prescriptions Against Heretics
• Scorpiace

Origen:

• Contra Celsum, Book 1.
• Contra Celsum, Book 2.
• Contra Celsum, Book 3.
• Contra Celsum, Book 4.
• Contra Celsum, Book 5.
• Contra Celsum, Book 6.
• Contra Celsum, Book 7.
• Contra Celsum, Book 8.
   

Hippolytus:

• Refutations of all Heresies, Book 1.
• Refutations of all Heresies, (Books 2 and 3 are not extant.)
• Refutations of all Heresies, Book 4.
• Refutations of all Heresies, Book 5.
• Refutations of all Heresies, Book 6.
• Refutations of all Heresies, Book 7.
• Refutations of all Heresies, Book 8.
• Refutations of all Heresies, Book 9.
• Refutations of all Heresies, Book 10.

Clement of Alexandria:

• Stromata, Book 1.
• Stromata, Book 2.
• Stromata, Book 4.
• Stromata, Book 6.
• Stromata, Book 7.

• Pseudo-Clementine, Recognitions, Book 2
  (The Duel Between Simon Magus and Peter)
• Pseudo-Clementine, Recognitions, Book 3

Augustine:

• Contra Epistolam Fundamenti Manichaei (Against the Fundamental Epistle of Mani)
• Contra Faustum Manichaeum, Books I - XV (Against Faustus, the Manichaean)
  Contra Faustum Manichaeum, Books XVI-XXII
  Contra Faustum Manichaeum, Books XXIII-XXXIII
• De Moribus Ecclesiae Catholicae (On the Morals of the Catholic Church)
• De Moribus Manichaerorum (On the Morals of the Manichaeans)
• De Duabus Animabus Contra Manichaeos (Concerning Two Souls: Against the Manichaeans)
• Disputatio Contra Fortunatum Manichaeum (Disputations Against Fortunatus, the Manichaean)
• De Natura Boni, Contra Manichaeos (Concerning the Nature of Good: Against the Manichaeans)

Others Writers:

• Chrysostom, Homily Against Marcionists and Manichaeans
• Jerome, Letter to Pammachius Against John of Jerusalem
• Jerome, Letter Against Vigilantius
• Ephraim: Third Discourse to Hypatius Against Mani, Marcion, and Bardaisan